• Gill H, Leung GMK, Yim R , Lee P, Pang HH, Ip HW, Leung RYY, Li J, Panagiotou G, Ma ESK, Kwong YL (2020) Myeloproliferative neoplasms treated with hydroxyurea, pegylated interferon alpha-2A orruxolitinib: clinicohematologic responses, quality-of-life changes and safety in the real-world setting. Hematology [In press]

  • lango M, Pschibul A, Rivieccio F, Krüger T, Rafiq M, Jia L, Zheng T, Goldmann M, Voltersen V, Li Jun, Panagiotou G, Kniemeyer O, Brakhage A (2020). The dynamic surface proteomes of allergenic fungal conidia. Journal of Proteome Research [in press].

  • H Cakir T, Panagiotou G, Uddin R, Durmuş S (2020). Novel Approaches for Systems Biology of Metabolism-Oriented Pathogen-Human Interactions: A Mini-Review. Frontiers in Cellular and Infection Microbiology, 10:52. doi: 10.3389/fcimb.2020.00052.

  • Heshiki Y, Vazquez-Uribe R, Li J, Ni Y, Quainoo S, Imamovic L, Li J, Sørensen M, Chow BKC, Weiss GJ, Xu A, Sommer MOA, Panagiotou G* (2020). Predictable modulation of cancer treatment outcomes by the gut microbiota. Microbiome, Mar 5;8(1):28. doi: 10.1186/s40168-020-00811-2

  • Gill H, Yim R, Pang HH, Lee P, Chan TSY, Hwang YY, Leung GMK, Ip HW, Leung RYY, Yip SF, Kho B, Lee HKK, Mak V, Chan CC, Lau JSM, Lau CK, Lin SY, Wong RSM, Li W, Ma ESK, Li J, Panagiotou G , Sim JPY, Lie AKW, Kwong YL (2020). Clofarabine in combination with cytarabine and mitoxantrone (CLAM) is highly effective in patients with relapsed or refractory acute myeloid leukemia failing first-line induction chemotherapy. Cancer Med. 2020;00:1–12. https ://doi.org/10.1002/cam4.2865.

  • Haange SB, Jehmlich N, Krügel U, Hintschich C, Wehrmann D, Hankir M, Seyfried F, Froment J, Hübschmann T, Müller S, Wissenbach DK, Kang K, Buettner C, Panagiotou G, Noll M, Rolle-Kampczyk U, Fenske W, von Bergen M (2020). Gastric bypass surgery in a rat model alters the community structure and functional composition of the intestinal microbiota independently of weight loss. Microbiome, 8:13. doi.org/10.1186/s40168-020-0788-1.

  • Liu Y, Wang Y, Ni Y, Lam KSL, Wang Y, Xia Z, TSE MA, Panagiotou G*, Xu A (2019). Gut microbiome fermentation determines the therapeutic efficacy of exercise on insulin resistance in individuals with prediabetes. Cell Metabolism, pii: S1550-4131(19)30608-4. doi: 10.1016/j.cmet.2019.11.001.

  • Chen J, Mcllroy SE, Anand A, Baker DM, Panagiotou G* (2019). A pollution gradient contributes to the taxonomic, functional, and resistome diversity of microbial communities in marine sediments. Microbiome. 2019. doi: 10.1186/s40168-019-0714-6.

  • Zheng T, Li J, Ni Y, Kang K, Misiakou MA, Imamovic L, Chow BKC, Rode AA, Bytzer P, Sommer MOA, Panagiotou G* (2019). Mining, analyzing and integrating viral signals from metagenomic data. Microbiome, 19;7(1):42. doi: 10.1186/s40168-019-0657-y.

  • Kang K, Bergdhal B, Machado D, Morgan H, Li J, Dato L, Villas-Boas S, Herrgard MJ, Foster J, Panagiotou G* (2019). Linking genetic, metabolic and phenotypic diversity among S. cerevisiae strains using multi-omics associations. GigaScience, doi.org/10.1093/gigascience/giz015.

  • Li J, Rettedal EA, van der Helm E, Ellabaan M, Panagiotou G*, Sommer MOA (2019). Antibiotic treatment drives the diversification of the human gut resistome. Genomics, Proteomics & Bioinformatics, Apr 23. pii: S1672-0229(19)30060-9. doi: 10.1016/j.gpb.2018.12.003.

  • Zhang L, Ouyang Y, Li H, Shen L, Ni Y, Fang Q, Wu G, Qian L, Xiao Y, Zhang J, Yin P, Panagiotou G, Xu G, Ye J, Jia W (2018) Metabolic phenotypes and gut microbiota in response to dietary resistant starch type 2 in normal-weight subjects: a randomized crossover trial. Scientific Reports 9(1), 4736.

  • Gill H, Ip HW, Yim R, Tang WF, Pang HH, Lee P, Leung GMK, Li J, Tang K, So JCC, Leung RZZ, Li J, Panagiotou G, Lam CCK, Kwong YL (2018). Next-generation sequencing with a 54-gene panel identified unique mutational profile and prognostic markers in Chinese patients with myeolofibrosis. Ann Hematol, Dec 4. doi: 10.1007/s00277-018-3563-7.

  • Kang K, Ni Z, Li J, Imamovic L, Sarkar C, Kobler MD, Heshiki Z, Zheng T, Kumari S, Wong JCY, Acahna A, Wong CWM, Dingle C, Denizen S, Baker DM, Sommer MOA, Webster CJ, Panagiotou G* (2018). The Environmental Exposures and Inner- and Intercity Traffic Flows of the Metro System May Contribute to the Human Skin Microbiome and Resistome. Cell Reports, Jul 31;24(5):1190-1202.e5. doi: 10.1016/j.celrep.2018.06.109.

  • Lau SKP, Teng JLL, Chiu TH, Chan E, Tsang AKL, Panagiotou G, Zhai SL, Woo PCY (2018). Differential Microbial Communities of Omnivorous and Herbivorous Cattle in Southern China. Computational and Structural Biotechnology Journal, Feb 15;16:54-60. doi: 10.1016/j.csbj.2018.02.004.

  • Imamovic L, Misiakou MA, van der Helm E, Panagiotou G, Muniesa M, Sommer MOA (2018). Complete Genome Sequence of Escherichia Coli Strain WG5. Genome Announc, Jan 11;6(2). pii: e01403-17. doi: 10.1128/genomeA.01403-17.

  • Zheng T, Ni Y, Li J, Chow BKC, Panagiotou G* (2017). Designing Dietary Recommendations Using System Level Interactomics Analysis and Network-Based Inference. Frontiers in Physiology. 28;8:753. doi: 10.3389/fphys.2017.00753. eCollection.

  • Ni Y, Jensen K, Kouskoumvekaki I, Panagiotou G* (2017). NutriChem 2.0: exploring the effect of plant-based foods on human health and drug efficacy. Database (Oxford), Jan 1;2017. doi: 10.1093/database/bax044.

  • Heshiki Y, Dissanayake T, Zheng T, Kang K, Ni Y, Xu Z, Sarkar C, Woo PCY, Chow BKC, Baker D, Yan A, Webster CJ, Panagiotou G*, Li J (2017). Toward a Metagenomic Understanding on the Bacterial Composition and Resistome in Hong Kong Banknotes. Front Microbiol, Apr 13;8:632. doi: 10.3389/fmicb.2017.00632.

  • Ni Y, Wong VHY, Tai WCS, Li J, Wong WY, Lee MML, Fong FLY, El-Nezami H, Panagiotou G* (2017). A metagenomic study of the preventive effect of Lactobacillus rhamnosus GG on intestinal polyp formation in ApcMin/+ mice. J Appl Microbiol, Mar;122(3):770-784. doi: 10.1111/jam.13386.

  • Ni Y, Li J, Panagiotou G* (2016). COMAN: a web server for Comprehensive Metatranscriptomics Analysis. BMC Genomics, Aug 11;17(1):622. doi: 10.1186/s12864-016-2964-z.

  • Liang C, Cheng S, Zhang Y, Sun Y, Fernie AR, Kang K, Panagiotou G, Lo C, Lim BL (2016). Transcriptomic, proteomic and metabolic changes in Arabidopsis thaliana leaves after the onset of illumination. BMC Plant Biology, Feb 11;16:43. doi: 10.1186/s12870-016-0726-3.

  • J. Li, C. Ying Ju Sung, N. Lee, Y. Ni, J. Pihlajamäki, Panagiotou G*, H. El-Nezami (2016). Probiotics modulated gut microbiota suppresses hepatocellular carcinoma growth in mice. Proceedings of the National Academy of Sciences, Mar 1;113(9):E1306-15. doi: 10.1073/pnas.1518189113.

  • Ni Y, Li J, Panagiotou G* (2015). A Molecular-Level Landscape of Diet-Gut Microbiome Interactions: Toward Dietary Interventions Targeting Bacterial Genes. mBIO, Oct 27;6(6):e01263-15. doi: 10.1128/mBio.01263-15.

  • Udatha DBRKG, Topakas E, Salazar M, Olsson L, Andersen MR, Panagiotou G*. (2015). Deciphering the Signaling Mechanisms of the Plant Cell Wall Degradation Machinery in Aspergillus oryzae. BMC Systems Biology, Nov 14;9:77. doi: 10.1186/s12918-015-0224-5.

  • Kang K, Li J, Lim BL, Panagiotou G* (2015). MESSI: metabolic engineering target selection and best strain identification tool. Database (Oxford), Aug 8;2015. pii: bav076. doi: 10.1093/database/bav076.

  • Udatha DBRKG, Madsen KM, Panagiotou G*, Olsson L (2015). Multiple nucleophilic elbows leading to multiple active sites in a single module esterase from Sorangium cellulosum. Journal of Structural Biology, Jun;190(3):314-27. doi: 10.1016/j.jsb.2015.04.009.

  • Jensen K, Ni Y, Panagiotou G*, Kouskoumvekaki I (2015). Developing a Molecular Roadmap of Drug-Food Interactions. PLoS Comput Biol. 11(2): e1004048. doi:10.1371/journal.pcbi.1004048.

  • Jensen K, Panagiotou G, I. Kouskoumvekaki (2015). NutriChem: a systems chemical biology resource to explore the medicinal value of plant-based foods. Nucleic Acids Research, Feb 10;11(2):e1004048. doi: 10.1371/journal.pcbi.1004048.

  • Westergaard D, Li L, Jensen K, Kouskoumvekaki I,Panagiotou G* (2014). Exploring mechanisms of diet-colon cancer associations through candidate molecular interaction networks. BMC Genomics, May 17;15:380. doi: 10.1186/1471-2164-15-380.

  • Jensen K, Panagiotou G*, Kouskoumvekaki I (2014). Integrated Text Mining and Chemoinformatics Analysis Associates Diet to Health Benefit at Molecular Level. PLOS Comput Biol. Jan;10(1):e1003432. doi: 10.1371/journal.pcbi.1003432.

  • Udatha DBRKG, Rasmussen S, Sicheritz-Ponten T,Panagiotou G* (2013). Targeted metabolic engineering analysis of single nucleotide polymorphisms (SNPs). Methods in Molecular Biology, 985:409-28. doi: 10.1007/978-1-62703-299-5_20.

  • Topakas E, Panagiotou G, Christakopoulos, P (2013). Characteristics, sources, production and applications of xylanases. In: Bioprocessing Technologies in Biorefinery for Sustainable Production of Fuels, Chemicals, and Polymers. Yang, S-T., El Ensashy, H. & Thongchul, N. (eds.). Wiley ,Ch. 9 ,p. 147-169.23 p. ISBN (print) 978-0-470-54195-1.

  • Jacobsen UP, Nielsen HB, Sicheritz-Ponten T, Kouskoumvekaki I, Panagiotou G* (2013). The chemical interactome space between the human host and the genetically defined gut metabotypes. ISME J, Apr;7(4):730-42. doi: 10.1038/ismej.2012.141 doi: 10.1038/ismej.2012.141.

  • Jensen K, Plitchta D, Brunak S, Panagiotou G*, I. Kouskoumvekaki (2012). Mapping the genome of Plasmodium falciparum on the drug-like chemical space reveals novel antimalarial targets and potential drug leads. Molecular Biosystems, Jun;8(6):1678-85. doi: 10.1039/c2mb00008c.

  • Herrgård M, Panagiotou G* (2012). Analysing the genomic variation of microbial cell factories in the era of "New Biotechnology". Computational and Structural Biotechnology, Nov 15;3:e201210012. doi: 10.5936/csbj.201210012.

  • Udatha DBRKG, Sugaya N, Olsson L, Panagiotou G* (2012). How well do the substrates KISS the enzyme? Molecular docking program selection for feruloyl esterases. Scientific Reports (NPG), 2:323. doi: 10.1038/srep00323.

  • Udatha DBRKG, Mapelli V, Panagiotou G, Olsson L (2012). Common and Distant Structural Characteristics of Feruloyl Esterase Families from Aspergillus oryzae. PLoS One, 7(6):e39473. doi: 10.1371/journal.pone.0039473.

  • Panagiotou G*, O. Taboureau (2012). The impact of network biology in pharmacology and toxicology. SAR and QSAR in Environmental Research, 23(3-4):221-35. doi: 10.1080/1062936X.2012.657237.

  • Panagiotou G, E. Topakas, M. Moukouli, P. Christakopoulos, L. Olsson (2011). Studying the ability of Fusarium oxysporum and recombinant Saccharomyces cerevisae to efficiently cooperate in decomposition and ethanolic fermentation of wheat straw. Biomass and Bioenergy, 35(8), 3727-3732.

  • Madsen KM, Semba S, Udatha DG, Otero JM, Koetter P, Nielsen J, Ebizuka Y, Kushiro T, Panagiotou G* (2011). Linking genotype and phenotype of Saccharomyces cerevisiae strains reveals metabolic engineering targets and leads to triterpene hyper-producers. PLoS One, Mar 18;6(3):e14763. doi: 10.1371/journal.pone.0014763.

  • Udatha DBRKG, Kouskoumvekaki I, Olsson L, Panagiotou G* (2011). The interplay of descriptor-based computational analysis with pharmacophore modelling builds the basis for a novel classification scheme for feruloyl esterases. Biotechnology Advances, Jan-Feb;29(1):94-110. doi: 10.1016/j.biotechadv.2010.09.003.

  • Otero JM, Papadakis M, Udatha DBRKG, Nielsen J, Panagiotou G* (2010). Yeast biological networks unfold the interplay of antioxidants, genome and phenotype and reveal a novel regulator of the oxidative stress response. PLoS One, Oct 25;5(10):e13606. doi: 10.1371/journal.pone.0013606.

  • Olivares-Hernández R, Yang Z, Sunner H, Frisvad J, Nielsen J, Olsson L, Panagiotou G* (2010). Substrate specificity with support vector classifiers reveals feruloyl esterase as a phylogenetically informative protein group. PLoS One, Sep 22;5(9):e12781. doi: 10.1371/journal.pone.0012781.

  • Kouskoumvekaki I, Panagiotou G* (2010). Navigating the human metabolome for biomarker identification and the design of pharmaceutical molecules. Journal of Biomedicine and Biotechnology, doi:pii: 525497. 10.1155/2011/525497.

  • Panagiotou G, Topakas E, Olivares R, Christakopoulos P, Olsson L (2010). Feruloyl esterases as biosynthetic tools for the organic synthesis of nutraceutical compounds. Encyclopedia of Biotechnology in Agriculture and Food, Eds. Heldman and Bridges.

  • Salazar MP, Vongsangnak W, Panagiotou G, Andersen MR, Nielsen J (2009). Uncovering transcriptional regulation of glycerol metabolism in Aspergilli through genome-wide gene expression data analysis. Molecular Genetics and Genomics, Dec;282(6):571-86. doi: 10.1007/s00438-009-0486-y.

  • Panagiotou G, Nielsen J (2009). Nutritional Systems Biology: definitions and approaches. Annual Review on Nutrition, 29:329-39. doi: 10.1146/annurev-nutr-080508-141138.

  • Panagiotou G, Grotkjaer T, Hofmann G, Bapat P, Olsson (2009). Overexpression of a novel endogenous NADH kinase in Aspergillus nidulans enhances growth. Metabolic Engineering, Jan;11(1):31-9. doi: 10.1016/j.ymben.2008.08.008.

  • Panagiotou G, Andersen MR, Grotkjaer T, Regueira T, Nielsen J, Olsson L (2009). Studies of the production of polyketides in Aspergillus nidulans by using systems biology tools. Applied and Environmental Microbiology, Apr;75(7):2212-20. doi: 10.1128/AEM.01461-08.

  • Panagiotou G, Andersen MR, Grotkjaer T, Regueira T, Hofmann G, Nielsen J, Olsson L (2008). Systems analysis unfolds the relationship between the phosphoketolase pathway and growth in Aspergillus nidulans. PLoS One, 3(12):e3847. doi: 10.1371/journal.pone.0003847.

  • Panagiotou G*, Papadakis M, Topakas E, Olsson L, Christakopoulos P (2008). Identification of NADH kinase activity in filamentous fungi and structural modelling of the novel enzyme from Fusarium oxysporum. Process Biochemistry, Oct; 43, 1114-1120, doi.org/10.1016/j.procbio.2008.06.011.

  • M.R Andersen, W. Vongsangnak, Panagiotou G, M.P. Salazar, L. Lehmann, J. Nielsen (2008). A tri-species Aspergillus microarray: Comparative transcriptomics of three Aspergillus species. Proceedings of the National Academy of Sciences (PNAS), Mar 18;105(11):4387-92. doi: 10.1073/pnas.0709964105.

  • Panagiotou G, Pachidou F, Petroutsos D, Olsson L, Christakopoulos P (2008). Fermentation characteristics of Fusarium oxysporum grown on acetate. Bioresource Technology, Oct;99(15):7397-401. doi: 10.1016/j.biortech.2008.01.017.

  • Kouskoumvekaki I, Yang Z, Jonsdottir SO, Olsson L, Panagiotou G* (2008). Identification of biomarkers for genotyping Aspergilli using non-linear methods for clustering and classification. BMC Bioinformatics, Jan 28;9:59. doi: 10.1186/1471-2105-9-59.

  • Panagiotou G, Kouskoumvekaki I, Jonsdottir SO, Olsson L (2007). Monitoring novel metabolic pathways using metabolomics and machine learning; induction of the phosphoketolase pathway in Aspergillus nidulans cultivations. Metabolomics, Dec, 3:503-516, doi: 10.1007/s11306-007-0061-7.

  • Otero JM, Panagiotou G, Olsson L (2007). Fuelling Industrial Biotechnology Growth with Bioethanol. Advances in Biochemical/Biotechnology Engineering, 108,1-40.

  • Panagiotou G, Olavarria R, Olsson L (2007). Penicillium brasilianum as an enzyme factory; the essential role of feruloyl esterases for the hydrolysis of plant cell wall. J. of Biotechnology, Jun 30;130(3):219-28.

  • Meijer S, Panagiotou G, Olsson L, Nielsen J (2007). Physiological characterization of xylose metabolism in Aspergillus niger under oxygen limitation. Biotechnology and Bioengineering, Oct 1;98(2):462-75.

  • Panagiotou G, Olsson L (2007). Effect of compounds released during pretreatment of wheat straw on microbial growth and enzymatic hydrolysis rates. Biotechnology and Bioengineering, Feb 1;96(2):250-8.

  • Panagiotou G, Christakopoulos P, Grotkjær T, Nielsen J, Olsson L (2006). Engineering of the redox imbalance of Fusarium oxysporum enables anaerobic growth on xylose. Metabolic Engineering, Sep;8(5):474-82.

  • Panagiotou G, Granouillet P, Olsson L (2006). Production and partial characterization of arabinoxylan-degrading enzymes by Penicillium brasilianum under solid state fermentation. Applied Microbiology and Biotechnology, Oct;72(6):1117-24.

  • Panagiotou G, Christakopoulos P, Olsson L (2005). The influence of different cultivation conditions on the metabolome of F. oxysporum. J. of Biotechnology, Aug 22;118(3):304-15.

  • Panagiotou G, Christakopoulos P, Olsson L (2005). Simultaneous saccharification and fermentation of cellulose by Fusarium oxysporum F3 – growth characteristics and metabolite profiling. Enzyme and Microbial Technology, Apr, 36, 693-699, oi.org/10.1016/j.enzmictec.2004.12.029.

  • Panagiotou G, Villas-Boas SG, Christakopoulos P, Nielsen J, Olsson L (2005). Intracellular metabolite profiling of Fusarium oxysporum converting glucose to ethanol. J. of Biotechnology, Feb 23;115(4):425-34.

  • Panagiotou G, Christakopoulos P, Villas-Boas SG, Olsson L (2005). Fermentation performance and intracellular metabolite profiling of Fusarium oxysporum cultivated on a glucose-xylose mixture. Enzyme and Microbial Technology, Jan 6, 36, 100-106, doi.org/10.1016/j.enzmictec.2004.07.009.

  • Panagiotou G, Christakopoulos P (2004). NADPH-dependent D-aldose reductases and xylose fermentation in Fusarium oxysporum. J. of Bioscience and Bioengineering, 97(5):299-304.

  • Panagiotou G, Topakas E, Economou L, Kekos D, Makris BJ, Christakopoulos P (2003). Induction, purification and characterization of two extracellular a-L-arabinofuranisidases from F. oxysporum. Canadian Journal of Microbiology, Oct;49(10):639-44.

  • Panagiotou G, Kekos D, Makris BJ, Christakopoulos P (2003). Production of cellulotic and xylanolytic enzymes by F. oxysporum grown on corn stover in solid state fermentation. Industrial Crops and Products, 01, 1-9, doi.org/10.1016/S0926-6690(03)00018-9.

  • Panagiotou G, Kekos D, Makris BJ, Christakopoulos P (2002). Purification and characterization of xylitol dehydrogenase from Fusarium oxysporum. Biotechnology Letters, 24, 2089-2092.

* indicates correspondence